2018
Goeke JE, Kist S, Schubert S, Hickel R, Huth KC, Kollmuss M. 2018. Sensitivity of caries pathogens to antimicrobial peptides related to caries risk. Clin Oral Investig doi:10.1007/s00784-018-2348-7.
www.ncbi.nlm.nih.gov/pubmed/29372443

2017
Biehl LM, Bertz H, Bogner J, Dobermann UH, Kessel J, Kramer C, Lemmen S, von Lilienfeld-Toal M, Peter S, Pletz MW, Rohde H, Schmiedel S, Schubert S, Ullmann AJ, Fatkenheuer G, Vehreschild MJGT. 2017. Screening and contact precautions - A survey on infection control measures for multidrug-resistant bacteria in German university hospitals. Antimicrob Resist Infect Control 6:37.
www.ncbi.nlm.nih.gov/pubmed/28413631

Kist S, Kollmuss M, Jung J, Schubert S, Hickel R, Huth KC. 2017. Comparison of ozone gas and sodium hypochlorite/chlorhexidine two-visit disinfection protocols in treating apical periodontitis: a randomized controlled clinical trial. Clin Oral Investig 21:995-1005.
www.ncbi.nlm.nih.gov/pubmed/27173580

Messerer M, Fischer W, Schubert S. 2017. Investigation of horizontal gene transfer of pathogenicity islands in Escherichia coli using next-generation sequencing. PLoS One 12:e0179880.
www.ncbi.nlm.nih.gov/pubmed/28732043

Panya S, Fliefel R, Probst F, Troltzsch M, Ehrenfeld M, Schubert S, Otto S. 2017. Role of microbiological culture and polymerase chain reaction (PCR) of actinomyces in medication-related osteonecrosis of the jaw (MRONJ). J Craniomaxillofac Surg 45:357-363.
www.ncbi.nlm.nih.gov/pubmed/28162845

Smati M, Magistro G, Adiba S, Wieser A, Picard B, Schubert S, Denamur E. 2017. Strain-specific impact of the high-pathogenicity island on virulence in extra-intestinal pathogenic Escherichia coli. Int J Med Microbiol 307:44-56.
www.ncbi.nlm.nih.gov/pubmed/27923724

Magistro G, Magistro C, Stief CG, Schubert S. 2017. The high-pathogenicity island (HPI) promotes flagellum-mediated motility in extraintestinal pathogenic Escherichia coli. PLoS One 12:e0183950.
www.ncbi.nlm.nih.gov/pubmed/29016611

Almagro-Molto M, Haas A, Melcher C, Nam-Apostolopoulos YC, Schubert S. 2017. First case of Roussoella percutanea bursitis. Diagn Microbiol Infect Dis 87:172-174.
www.ncbi.nlm.nih.gov/pubmed/27842764

Pritsch M, Zeynudin A, Messerer M, Baumer S, Liegl G, Schubert S, Loscher T, Hoelscher M, Belachew T, Rachow A, Wieser A. 2017. First report on bla NDM-1-producing Acinetobacter baumannii in three clinical isolates from Ethiopia. BMC Infect Dis 17:180.
www.ncbi.nlm.nih.gov/pubmed/28249575

2016
Dolch ME, Janitza S, Boulesteix AL, Grassmann-Lichtenauer C, Praun S, Denzer W, Schelling G, Schubert S. 2016. Gram-negative and -positive bacteria differentiation in blood culture samples by headspace volatile compound analysis. J Biol Res (Thessalon ) 23:3.
www.ncbi.nlm.nih.gov/pubmed/26973820

Grassl N, Kulak NA, Pichler G, Geyer PE, Jung J, Schubert S, Sinitcyn P, Cox J, Mann M. 2016. Ultra-deep and quantitative saliva proteome reveals dynamics of the oral microbiome. Genome Med 8:44.
www.ncbi.nlm.nih.gov/pubmed/27102203

Jung JS, Hamacher C, Gross B, Sparbier K, Lange C, Kostrzewa M, Schubert S. 2016. Evaluation of a Semiquantitative Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry Method for Rapid Antimicrobial Susceptibility Testing of Positive Blood Cultures. J Clin Microbiol 54:2820-2824.
www.ncbi.nlm.nih.gov/pubmed/27629893

Pfeiler S, Khandagale AB, Magenau A, Nichols M, Heijnen HF, Rinninger F, Ziegler T, Seveau S, Schubert S, Zahler S, Verschoor A, Latz E, Massberg S, Gaus K, Engelmann B. 2016. Distinct surveillance pathway for immunopathology during acute infection via autophagy and SR-BI. Sci Rep 6:34440.
www.ncbi.nlm.nih.gov/pubmed/27694929

Pritsch M, Ben-Khaled N, Chaloupka M, Kobold S, Berens-Riha N, Peter A, Liegl G, Schubert S, Hoelscher M, Loscher T, Wieser A. 2016. Comparison of Intranasal Outer Membrane Vesicles with Cholera Toxin and Injected MF59C.1 as Adjuvants for Malaria Transmission Blocking Antigens AnAPN1 and Pfs48/45. J Immunol Res 2016:3576028.
www.ncbi.nlm.nih.gov/pubmed/27239480

Waldhuber A, Puthia M, Wieser A, Cirl C, Durr S, Neumann-Pfeifer S, Albrecht S, Rommler F, Muller T, Zheng Y, Schubert S, Gross O, Svanborg C, Miethke T. 2016. Uropathogenic Escherichia coli strain CFT073 disrupts NLRP3 inflammasome activation. J Clin Invest 126:2425-2436.
www.ncbi.nlm.nih.gov/pubmed/27214553

Sparbier K, Schubert S, Kostrzewa M. 2016. MBT-ASTRA: A suitable tool for fast antibiotic susceptibility testing? Methods 104:48-54.
www.ncbi.nlm.nih.gov/pubmed/26804565

2015
Magistro G, Hoffmann C, Schubert S. 2015. The salmochelin receptor IroN itself, but not salmochelin-mediated iron uptake promotes biofilm formation in extraintestinal pathogenic Escherichia coli (ExPEC). Int J Med Microbiol 305:435-445.
www.ncbi.nlm.nih.gov/pubmed/25921426

Meyer C, Hoffmann C, Haas R, Schubert S. 2015. The role of the galU gene of uropathogenic Escherichia coli in modulating macrophage TNF-alpha response. Int J Med Microbiol 305:893-901.
www.ncbi.nlm.nih.gov/pubmed/26481693

Zhou H, Yang D, Ivleva NP, Mircescu NE, Schubert S, Niessner R, Wieser A, Haisch C. 2015. Label-Free in Situ Discrimination of Live and Dead Bacteria by Surface-Enhanced Raman Scattering. Anal Chem 87:6553-6561.
www.ncbi.nlm.nih.gov/pubmed/26017069

Almagro-Molto M, Eder W, Schubert S. 2015. Bordetella trematum in chronic ulcers: report on two cases and review of the literature. Infection 43:489-494.
www.ncbi.nlm.nih.gov/pubmed/25600927

2014
Jung JS, Eberl T, Sparbier K, Lange C, Kostrzewa M, Schubert S, Wieser A. 2014. Rapid detection of antibiotic resistance based on mass spectrometry and stable isotopes. Eur J Clin Microbiol Infect Dis 33:949-955.
www.ncbi.nlm.nih.gov/pubmed/24338093

Jung JS, Popp C, Sparbier K, Lange C, Kostrzewa M, Schubert S. 2014. Evaluation of matrix-assisted laser desorption ionization-time of flight mass spectrometry for rapid detection of beta-lactam resistance in Enterobacteriaceae derived from blood cultures. J Clin Microbiol 52:924-930.
www.ncbi.nlm.nih.gov/pubmed/24403301

Kakoschke T, Kakoschke S, Magistro G, Schubert S, Borath M, Heesemann J, Rossier O. 2014. The RNA chaperone Hfq impacts growth, metabolism and production of virulence factors in Yersinia enterocolitica. PLoS One 9:e86113.
www.ncbi.nlm.nih.gov/pubmed/24454955

Lange C, Schubert S, Jung J, Kostrzewa M, Sparbier K. 2014. Quantitative matrix-assisted laser desorption ionization-time of flight mass spectrometry for rapid resistance detection. J Clin Microbiol 52:4155-4162.
www.ncbi.nlm.nih.gov/pubmed/25232164

Vehreschild MJ, Hamprecht A, Peterson L, Schubert S, Hantschel M, Peter S, Schafhausen P, Rohde H, Lilienfeld-Toal MV, Bekeredjian-Ding I, Libam J, Hellmich M, Vehreschild JJ, Cornely OA, Seifert H. 2014. A multicentre cohort study on colonization and infection with ESBL-producing Enterobacteriaceae in high-risk patients with haematological malignancies. J Antimicrob Chemother 69:3387-3392.
https://www.ncbi.nlm.nih.gov/pubmed/25103492

Wieser A, Storz E, Liegl G, Peter A, Pritsch M, Shock J, Wai SN, Schubert S. 2014. Efficient quantification and characterization of bacterial outer membrane derived nano-particles with flow cytometric analysis. Int J Med Microbiol 304:1032-1037.
www.ncbi.nlm.nih.gov/pubmed/25139826

Deetjen P, Maurer C, Rank A, Berlis A, Schubert S, Hoffmann R. 2014. Brain abscess caused by Ureaplasma urealyticum in an adult patient. J Clin Microbiol 52:695-698.
www.ncbi.nlm.nih.gov/pubmed/24478517

Fleischhacker S, Horstmann C, Hartmann K, Schubert S, Dorsch R. 2014. Carbonate apatite nephrolithiasis associated with Corynebacterium urealyticum urinary tract infection in a dog. Aust Vet J 92:161-165.
www.ncbi.nlm.nih.gov/pubmed/24766046

Wenzel M, Jakob L, Wieser A, Schauber J, Dimitriadis K, Schubert S, Pfister HW. 2014. Corticosteroid-induced meningococcal meningitis in a patient with chronic meningococcemia. JAMA Dermatol 150:752-755.
www.ncbi.nlm.nih.gov/pubmed/24577072

2013

Martin, P., Marcq, I., Magistro, G., Penary, M., Garcie, C., Payros, D., Boury, M., Olier, M., Nougayrede, J.P., Audebert, M., Chalut, C., Schubert, S., Oswald, E., 2013. Interplay between Siderophores and Colibactin Genotoxin Biosynthetic Pathways in Escherichia coli. PLoS. Pathog. 9(7):e1003437.
http://www.ncbi.nlm.nih.gov/pubmed/23853582

Sparbier, K., Lange, C., Jung, J., Wieser, A., Schubert, S., Kostrzewa, M., 2013. MALDI Biotyper-Based Rapid Resistance Detection by Stable-Isotope Labeling. J Clin Microbiol Nov;51(11):3741-8.
http://www.ncbi.nlm.nih.gov/pubmed/24006001

Nörenberg, D., Wieser, A., Magistro, G., Hoffmann, C., Meyer, C., Messerer, M., Schubert, S., 2013. Molecular analysis of a novel Toll/interleukin-1 receptor (TIR)-domain containing virulence protein of Y. pseudotuberculosis among Far East scarlet-like fever serotype I strains. Int. J Med. Microbiol 303(8):583-94.
http://www.ncbi.nlm.nih.gov/pubmed/24018301

Jung, J.S., Eberl, T., Sparbier, K., Lange, C., Kostrzewa, M., Schubert, S., Wieser, A., 2013. Rapid detection of antibiotic resistance based on mass spectrometry and stable isotopes. Eur. J Clin Microbiol Infect. Dis.
http://www.ncbi.nlm.nih.gov/pubmed/24338093

Magistro, G., Scherberich, J.E., Bogner, J.R., Schubert, S., Stief, C.G., Gratzke, C., 2013. [Urinary tract infections]. MMW. Fortschr. Med. 155 Spec No 1, 65-69.
http://www.ncbi.nlm.nih.gov/pubmed/24260922

Sammet, S., Wieser, A., Muller, S., Huber, M., Schubert, S., Seybold, U., 2013. Triple worm infestation in an HIV-infected patient. Infection. 2013 Oct;41(5):1053-4.
http://www.ncbi.nlm.nih.gov/pubmed/23722998

Deetjen P, Maurer C, Rank A, Berlis A, Schubert S, Hoffmann R, 2013. Ureaplasma urealyticum brain abscess in an adult patient. J. Clin. Microbiol.
http://www.ncbi.nlm.nih.gov/pubmed/24335946

Kostrzewa M, Sparbier K, Maier T, Schubert S., 2013. MALDI-TOF MS: an upcoming tool for rapid detection of antibiotic resistance in microorganisms. Proteomics Clin. Appl. 2013 Dec;7(11-12):767-78.
http://www.ncbi.nlm.nih.gov/pubmed/24123965

2012

Sparbier,K., Schubert,S., Weller,U., Boogen,C., and Kostrzewa,M. 2012. MALDI-TOF MS based functional assay for the rapid detection of resistance against beta-lactam antibiotics. J Clin Microbiol.
http://www.ncbi.nlm.nih.gov/pubmed/22205812

Loetscher, Y., A. Wieser, J. Lengefeld, P. Kaiser, S. Schubert, M. Heikenwalder, W. D. Hardt, and B. Stecher. 2012. Salmonella transiently reside in luminal neutrophils in the inflamed gut. PLoS One. 2012;7(4):e34812.
http://www.ncbi.nlm.nih.gov/pubmed/22493718

Pritsch, M., A. Wieser, V. Soederstroem, D. Poluda, T. Eshetu, M. Hoelscher, S. Schubert, J. Shock, T. Loescher, and N. Berens-Riha. 2012. Stability of gametocyte-specific Pfs25-mRNA in dried blood spots on filter paper subjected to different storage conditions. Malar J. 11:138.
http://www.ncbi.nlm.nih.gov/pubmed/22545954

Dolch, M. E., C. Hornuss, C. Klocke, S. Praun, J. Villinger, W. Denzer, G. Schelling, and S. Schubert. 2012. Volatile organic compound analysis by ion molecule reaction mass spectrometry for gram-positive bacteria differentiation. Eur. J. Clin. Microbiol. Infect. Dis. 31(11):3007-13.
http://www.ncbi.nlm.nih.gov/pubmed/22782437

Dolch, M. E., C. Hornuss, C. Klocke, S. Praun, J. Villinger, W. Denzer, G. Schelling, and S. Schubert. 2012. Volatile compound profiling for the identification of Gram-negative bacteria by ion-molecule reaction-mass spectrometry. J. Appl. Microbiol. 113(5):1097-105.
http://www.ncbi.nlm.nih.gov/pubmed/22830412

Wieser A, Schneider L, Jung J, Schubert S., 2012. MALDI-TOF MS in microbiological diagnostics-identification of microorganisms and beyond (mini review). Appl Microbiol Biotechnol. 93(3):965-74. Review.
http://www.ncbi.nlm.nih.gov/pubmed/22198716

2011

Schubert, S., Weinert, K., Wagner, C., Gunzl, B., Wieser, A., Maier, T., and Kostrzewa, M. 2011. Novel, Improved Sample Preparation for Rapid, Direct Identification from Positive Blood Cultures Using Matrix-Assisted Laser Desorption/Ionization Time-of-Flight (MALDI-TOF) Mass Spectrometry. J Mol Diagn 13:701-706.
http://www.ncbi.nlm.nih.gov/pubmed/21889611

Wieser, A., Guggenberger, C., Pritsch, M., Heesemann, J., and Schubert, S. 2011. A novel ex vivo set-up for dynamic long-term characterization of processes on mucosal interfaces by confocal imaging and simultaneous cytokine measurements. Cell Microbiol 13:742-751.
http://www.ncbi.nlm.nih.gov/pubmed/21496196

Wieser, A., Magistro, G., Norenberg, D., Hoffmann, C., and Schubert, S. 2011. First multi-epitope subunit vaccine against extraintestinal pathogenic Escherichia coli delivered by a bacterial type-3 secretion system (T3SS). Int J Med Microbiol.
http://www.ncbi.nlm.nih.gov/pubmed/22000741

Seybold, U., Schubert, S., Bogner, J.R., and Hogardt, M. 2011. Staphylococcus aureus infection following nasal colonization: an approach to rapid risk stratification in a university healthcare system. J Hosp Infect. 79(4):297-301.
http://www.ncbi.nlm.nih.gov/pubmed/22018814

Wieser, A., Schneider, L., Jung, J., and Schubert, S. 2011. MALDI-TOF MS in microbiological diagnostics-identification of microorganisms and beyond (mini review). Appl Microbiol Biotechnol. DOI 10.1007/s00253-011-3783-4.
http://www.ncbi.nlm.nih.gov/pubmed/22198716

2010

Schubert, S., Norenberg, D., Clermont, O., Magistro, G., Wieser, A., Romann, E., Hoffmann, C., Weinert, K., and Denamur, E. 2010. Prevalence and phylogenetic history of the TcpC virulence determinant in Escherichia coli. Int J Med Microbiol 300:429-434.
http://www.ncbi.nlm.nih.gov/pubmed/20547102

Wieser, A., Romann, E., Magistro, G., Hoffmann, C., Norenberg, D., Weinert, K., and Schubert, S. 2010. A multiepitope subunit vaccine conveys protection against extraintestinal pathogenic Escherichia coli in mice. Infect Immun 78:3432-3442.
http://www.ncbi.nlm.nih.gov/pubmed/20498257

2009

Schubert S, Darlu P, Clermont O, Wieser A, Magistro G, Hoffmann C, Weinert K, Tenaillon O, Matic I, Denamur E. 2009. Role of intraspecies recombination in the spread of pathogenicity islands within the Escherichia coli species. PLoS Pathog. (1):e1000257.
http://www.ncbi.nlm.nih.gov/pubmed/19132082

2008

Cirl, C., A. Wieser, M. Yadav, S. Duerr, S. Schubert, H. Fischer, D. Stappert, N. Wantia, N. Rodriguez, H. Wagner, C. Svanborg, and T. Miethke. 2008. Subversion of Toll-like receptor signaling by a unique family of bacterial Toll/interleukin-1 receptor domain-containing proteins. Nat Med 14:399-406.
http://www.ncbi.nlm.nih.gov/pubmed/18327267


2007

Sorsa, L. J., Feldmann, F., Hildinger, K., Dufke, S., and Schubert, S. 2007. Characterization of four novel genomic regions of uropathogenic Escherichia coli highly associated with the extraintestinal virulent phenotype: a jigsaw puzzle of genetic modules. Int J Med Microbiol 297:83-95.
http://www.ncbi.nlm.nih.gov/pubmed/17280868

Feldmann, F., Sorsa, L. J., Hildinger, K., and Schubert, S. 2007. The salmochelin siderophore receptor IroN contributes to invasion of urothelial cells by extraintestinal pathogenic Escherichia coli in vitro. Infect Immun 75:3183-3187. http://www.ncbi.nlm.nih.gov/pubmed/17353289

Mennel, S., Schubert, S., and Muller, C. 2007. [Refractory intermediate uveitis in the presence of unexplained joint disease.]. Ophthalmologe 
http://www.ncbi.nlm.nih.gov/pubmed/17522867

Bielaszewska, M., Dobrindt, U., Gartner, J., Gallitz, I., Hacker, J., Karch, H., Muller, D., Schubert, S., Alexander, S. M., Sorsa, L. J., and Zdziarski, J. 2007. Aspects of genome plasticity in pathogenic Escherichia coli. Int J Med Microbiol  297(7-8):625-39. http://www.ncbi.nlm.nih.gov/pubmed/17462951

Benedek, O. and Schubert, S. 2007. Mobility of the Yersinia High-Pathogenicity Island (HPI): transfer mechanisms of pathogenicity islands (PAIS) revisited. Acta Microbiol Immunol Hung 54:89-105. 
http://www.ncbi.nlm.nih.gov/pubmed/17899790

2006

Hogardt, M., S. Schubert, K. Adler, M. Götzfried, and J. Heesemann. 2006. Sequence variability and functional analysis of MutS of hypermutable Pseudomonas aeruginosa cystic fibrosis isolates Int. J. Med. Microbiol. 296(4-5):313-20.
http://www.ncbi.nlm.nih.gov/pubmed/16542874

2005

Patole P, Schubert S, Segerer S, Meßmer A, Khandoga S, Khandoga A, Henger A, Kretzler M, Werner M, Krombach F, Schlöndorff D, Anders HJ. Toll-like receptor-4 on both renal cells and bone marrow-derived cells signals for neutrophil recruitment during infective pyelonephritis. Kidney Int 2005, 68:2582-2587
http://www.ncbi.nlm.nih.gov/pubmed/16316333

Johnson, J. R., A. C. Murray, M. A. Kuskowski, S. Schubert, M.-F. Prère, B. Picard, R. Colodner, and R. Raz. 2005. Distribution and Characteristics of Escherichia coli Clonal Group A. Emerg. Infect. Dis. 11:141-145
http://www.ncbi.nlm.nih.gov/pubmed/15705341

2004

Negre, V. L., S. Bonacorsi, S. Schubert, P. Bidet, X. Nassif, and E. Bingen. 2004. The Siderophore Receptor IroN, but Not the High-Pathogenicity-Island or the Hemin Receptor ChuA, Contributes to the Bacteremic Step of Escherichia coli Neonatal Meningitis. Infect. Immun. 72:1216-1220.
http://www.ncbi.nlm.nih.gov/pubmed/14742579
 
Sorsa, L. J., S. Dufke, and S. Schubert. 2004. Identification of novel virulence-associated loci in uropathogenic Escherichia coli by suppression subtractive hybridization. FEMS Microbiol. Lett. 230:203-208.
http://www.ncbi.nlm.nih.gov/pubmed/14757241
 
Schubert, S., <st1:place w:st="on">S. Dufke</st1:place>, J. Sorsa, and J. Heesemann. 2004. A novel integrative and conjugative element (ICE) of Escherichia coli: the putative progenitor of the Yersinia high-pathogenicity island. Mol. Microbiol. 51:837-848.
http://www.ncbi.nlm.nih.gov/pubmed/14731283
 
Schubert, S., A. Rakin, and J. Heesemann. 2004. The Yersinia high-pathogenicity island (HPI): evolutionary and functional aspects. Int. J. Med. Microbiol. 294:83-94. 
http://www.ncbi.nlm.nih.gov/pubmed/15493818

2003

Trulzsch, K., H. Hoffmann, C. Keller, S. Schubert, L. Bader, J. Heesemann, and A. Roggenkamp. 2003. Highly Resistant Metabolically Deficient Dwarf Mutant of Escherichia coli Is the Cause of a Chronic Urinary Tract Infection. J. Clin. Microbiol. 41:5689-5694.
http://www.ncbi.nlm.nih.gov/pubmed/14662962

Waidmann, M., Bechtold, O., Frick, J.S., Lehr, H.A., Schubert, S., Dobrindt, U., Loeffler, J., Bohn, E., and Autenrieth, I.B. 2003. Bacteroides vulgatus protects against Escherichia coli-induced colitis in gnotobiotic interleukin-2-deficient mice. Gastroenterology 125: 162-177.
http://www.ncbi.nlm.nih.gov/pubmed/12851881
 
Oelschläger, T.A., Zhang, D., Schubert, S., Carniel, E., Rabsch, W., Karch, H., and Hacker, J. 2003. The high-pathogenicity island is absent in human pathogens of Salmonella enterica subspecies I but present in isolates of subspecies III and VI. J. Bacteriol. 185: 1107-1111.
http://www.ncbi.nlm.nih.gov/pubmed/12533488
 
Schubert, S., Bockemühl, J., Brendler, U., and Heesemann, J. 2003. First Isolation of Virulent Yersinia enterocolitica O8, Biotype 1B in Germany. Eur. J. Clin. Microbiol. Infect. Dis. 22: 66-68.
http://www.ncbi.nlm.nih.gov/pubmed/12582749
 
Sorsa, L.J., Dufke, S., Heesemann, J., and Schubert, S. 2003. Characterization of an iroBCDEN gene cluster on a transmissible plasmid of uropathogenic Escherichia coli: evidence for horizontal transfer of a chromosomal virulence factor. Infect. Immun. 71: 3285-3293.
http://www.ncbi.nlm.nih.gov/pubmed/12761110