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Forschung > Medizinische Mikrobiologie und Krankenhaushygiene > AG Prof. S. Schubert > Publikationen > 


Galardini M, Clermont O, Baron A, Busby B, Dion S, Schubert S, Beltrao P, Denamur E. 2020. Major role of iron uptake systems in the intrinsic extra-intestinal virulence of the genus Escherichia revealed by a genome-wide association study. PLoS Genet 16:e1009065.

Klemme M, Staffler A, De Maio N, Lauseker M, Schubert S, Innocenti P, Wurster TM, Foerster K, Herber-Jonat S, Mittal R, Messner H, Flemmer AW. 2020. Use of impregnated catheters to decrease colonization rates in neonates - A randomized controlled pilot trial. J Neonatal Perinatal Med 13:231-237.


Marcon J, Schubert S, Stief CG, Magistro G. 2019. In vitro efficacy of phytotherapeutics suggested for prevention and therapy of urinary tract infections. Infection 47:937-944.

Wisgrill L, Lepuschitz S, Blaschitz M, Rittenschober-Bohm J, Diab-El Schahawi M, Schubert S, Indra A, Berger A. 2019. Outbreak of Yersiniabactin-producing Klebsiella pneumoniae in a Neonatal Intensive Care Unit. Pediatr Infect Dis J 38:638-642.


Johnson JR, Magistro G, Clabots C, Porter S, Manges A, Thuras P, Schubert S. 2018. Contribution of yersiniabactin to the virulence of an Escherichia coli sequence type 69 ("clonal group A") cystitis isolate in murine models of urinary tract infection and sepsis. Microb Pathog 120:128-131.

Vatanshenassan M, Boekhout T, Lass-Florl C, Lackner M, Schubert S, Kostrzewa M, Sparbier K. 2018. Proof of Concept for MBT ASTRA, a Rapid Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry (MALDI-TOF MS)-Based Method To Detect Caspofungin Resistance in Candida albicans and Candida glabrata. J Clin Microbiol 56(9):e00420-18

Magistro G, Magistro C, Stief CG, Schubert S. 2018. A simple and highly efficient method for gene silencing in Escherichia coli. J Microbiol Methods 154:25-32.

Zeynudin A, Pritsch M, Schubert S, Messerer M, Liegl G, Hoelscher M, Belachew T, Wieser A. 2018. Prevalence and antibiotic susceptibility pattern of CTX-M type extended-spectrum beta-lactamases among clinical isolates of gram-negative bacilli in Jimma, Ethiopia. BMC Infect Dis 18:524.

Goeke JE, Kist S, Schubert S, Hickel R, Huth KC, Kollmuss M. 2018. Sensitivity of caries pathogens to antimicrobial peptides related to caries risk. Clin Oral Investig doi:10.1007/s00784-018-2348-7.


Biehl LM, Bertz H, Bogner J, Dobermann UH, Kessel J, Kramer C, Lemmen S, von Lilienfeld-Toal M, Peter S, Pletz MW, Rohde H, Schmiedel S, Schubert S, Ullmann AJ, Fatkenheuer G, Vehreschild MJGT. 2017. Screening and contact precautions - A survey on infection control measures for multidrug-resistant bacteria in German university hospitals. Antimicrob Resist Infect Control 6:37.

Kist S, Kollmuss M, Jung J, Schubert S, Hickel R, Huth KC. 2017. Comparison of ozone gas and sodium hypochlorite/chlorhexidine two-visit disinfection protocols in treating apical periodontitis: a randomized controlled clinical trial. Clin Oral Investig 21:995-1005.

Messerer M, Fischer W, Schubert S. 2017. Investigation of horizontal gene transfer of pathogenicity islands in Escherichia coli using next-generation sequencing. PLoS One 12:e0179880.

Panya S, Fliefel R, Probst F, Troltzsch M, Ehrenfeld M, Schubert S, Otto S. 2017. Role of microbiological culture and polymerase chain reaction (PCR) of actinomyces in medication-related osteonecrosis of the jaw (MRONJ). J Craniomaxillofac Surg 45:357-363.

Smati M, Magistro G, Adiba S, Wieser A, Picard B, Schubert S, Denamur E. 2017. Strain-specific impact of the high-pathogenicity island on virulence in extra-intestinal pathogenic Escherichia coli. Int J Med Microbiol 307:44-56.

Magistro G, Magistro C, Stief CG, Schubert S. 2017. The high-pathogenicity island (HPI) promotes flagellum-mediated motility in extraintestinal pathogenic Escherichia coli. PLoS One 12:e0183950.

Almagro-Molto M, Haas A, Melcher C, Nam-Apostolopoulos YC, Schubert S. 2017. First case of Roussoella percutanea bursitis. Diagn Microbiol Infect Dis 87:172-174.

Pritsch M, Zeynudin A, Messerer M, Baumer S, Liegl G, Schubert S, Loscher T, Hoelscher M, Belachew T, Rachow A, Wieser A. 2017. First report on bla NDM-1-producing Acinetobacter baumannii in three clinical isolates from Ethiopia. BMC Infect Dis 17:180.


Dolch ME, Janitza S, Boulesteix AL, Grassmann-Lichtenauer C, Praun S, Denzer W, Schelling G, Schubert S. 2016. Gram-negative and -positive bacteria differentiation in blood culture samples by headspace volatile compound analysis. J Biol Res (Thessalon ) 23:3.

Grassl N, Kulak NA, Pichler G, Geyer PE, Jung J, Schubert S, Sinitcyn P, Cox J, Mann M. 2016. Ultra-deep and quantitative saliva proteome reveals dynamics of the oral microbiome. Genome Med 8:44.

Jung JS, Hamacher C, Gross B, Sparbier K, Lange C, Kostrzewa M, Schubert S. 2016. Evaluation of a Semiquantitative Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry Method for Rapid Antimicrobial Susceptibility Testing of Positive Blood Cultures. J Clin Microbiol 54:2820-2824.

Pfeiler S, Khandagale AB, Magenau A, Nichols M, Heijnen HF, Rinninger F, Ziegler T, Seveau S, Schubert S, Zahler S, Verschoor A, Latz E, Massberg S, Gaus K, Engelmann B. 2016. Distinct surveillance pathway for immunopathology during acute infection via autophagy and SR-BI. Sci Rep 6:34440.

Pritsch M, Ben-Khaled N, Chaloupka M, Kobold S, Berens-Riha N, Peter A, Liegl G, Schubert S, Hoelscher M, Loscher T, Wieser A. 2016. Comparison of Intranasal Outer Membrane Vesicles with Cholera Toxin and Injected MF59C.1 as Adjuvants for Malaria Transmission Blocking Antigens AnAPN1 and Pfs48/45. J Immunol Res 2016:3576028.

Waldhuber A, Puthia M, Wieser A, Cirl C, Durr S, Neumann-Pfeifer S, Albrecht S, Rommler F, Muller T, Zheng Y, Schubert S, Gross O, Svanborg C, Miethke T. 2016. Uropathogenic Escherichia coli strain CFT073 disrupts NLRP3 inflammasome activation. J Clin Invest 126:2425-2436.

Sparbier K, Schubert S, Kostrzewa M. 2016. MBT-ASTRA: A suitable tool for fast antibiotic susceptibility testing? Methods 104:48-54.


Magistro G, Hoffmann C, Schubert S. 2015. The salmochelin receptor IroN itself, but not salmochelin-mediated iron uptake promotes biofilm formation in extraintestinal pathogenic Escherichia coli (ExPEC). Int J Med Microbiol 305:435-445.

Meyer C, Hoffmann C, Haas R, Schubert S. 2015. The role of the galU gene of uropathogenic Escherichia coli in modulating macrophage TNF-alpha response. Int J Med Microbiol 305:893-901.

Zhou H, Yang D, Ivleva NP, Mircescu NE, Schubert S, Niessner R, Wieser A, Haisch C. 2015. Label-Free in Situ Discrimination of Live and Dead Bacteria by Surface-Enhanced Raman Scattering. Anal Chem 87:6553-6561.

Almagro-Molto M, Eder W, Schubert S. 2015. Bordetella trematum in chronic ulcers: report on two cases and review of the literature. Infection 43:489-494.


Jung JS, Eberl T, Sparbier K, Lange C, Kostrzewa M, Schubert S, Wieser A. 2014. Rapid detection of antibiotic resistance based on mass spectrometry and stable isotopes. Eur J Clin Microbiol Infect Dis 33:949-955.

Jung JS, Popp C, Sparbier K, Lange C, Kostrzewa M, Schubert S. 2014. Evaluation of matrix-assisted laser desorption ionization-time of flight mass spectrometry for rapid detection of beta-lactam resistance in Enterobacteriaceae derived from blood cultures. J Clin Microbiol 52:924-930.

Kakoschke T, Kakoschke S, Magistro G, Schubert S, Borath M, Heesemann J, Rossier O. 2014. The RNA chaperone Hfq impacts growth, metabolism and production of virulence factors in Yersinia enterocolitica. PLoS One 9:e86113.

Lange C, Schubert S, Jung J, Kostrzewa M, Sparbier K. 2014. Quantitative matrix-assisted laser desorption ionization-time of flight mass spectrometry for rapid resistance detection. J Clin Microbiol 52:4155-4162.

Vehreschild MJ, Hamprecht A, Peterson L, Schubert S, Hantschel M, Peter S, Schafhausen P, Rohde H, Lilienfeld-Toal MV, Bekeredjian-Ding I, Libam J, Hellmich M, Vehreschild JJ, Cornely OA, Seifert H. 2014. A multicentre cohort study on colonization and infection with ESBL-producing Enterobacteriaceae in high-risk patients with haematological malignancies. J Antimicrob Chemother 69:3387-3392.

Wieser A, Storz E, Liegl G, Peter A, Pritsch M, Shock J, Wai SN, Schubert S. 2014. Efficient quantification and characterization of bacterial outer membrane derived nano-particles with flow cytometric analysis. Int J Med Microbiol 304:1032-1037.

Deetjen P, Maurer C, Rank A, Berlis A, Schubert S, Hoffmann R. 2014. Brain abscess caused by Ureaplasma urealyticum in an adult patient. J Clin Microbiol 52:695-698.

Fleischhacker S, Horstmann C, Hartmann K, Schubert S, Dorsch R. 2014. Carbonate apatite nephrolithiasis associated with Corynebacterium urealyticum urinary tract infection in a dog. Aust Vet J 92:161-165.

Wenzel M, Jakob L, Wieser A, Schauber J, Dimitriadis K, Schubert S, Pfister HW. 2014. Corticosteroid-induced meningococcal meningitis in a patient with chronic meningococcemia. JAMA Dermatol 150:752-755.


Martin P, Marcq I, Magistro G, Penary M, Garcie C, Payros D, Boury M, Olier M, Nougayrede JP, Audebert M, Chalut C, Schubert S, Oswald E. 2013. Interplay between Siderophores and Colibactin Genotoxin Biosynthetic Pathways in Escherichia coli. PLoS Pathog 9(7):e1003437.

Sparbier K, Lange C, Jung J, Wieser A, Schubert S, Kostrzewa M. 2013. MALDI Biotyper-Based Rapid Resistance Detection by Stable-Isotope Labeling. J Clin Microbiol 51(11):3741-8.

Nörenberg D, Wieser A, Magistro G, Hoffmann C, Meyer C, Messerer M, Schubert S. 2013. Molecular analysis of a novel Toll/interleukin-1 receptor (TIR)-domain containing virulence protein of Y. pseudotuberculosis among Far East scarlet-like fever serotype I strains. Int J Med Microbiol 303(8):583-94.

Jung JS, Eberl T, Sparbier K, Lange C, Kostrzewa M, Schubert S, Wieser A. 2013. Rapid detection of antibiotic resistance based on mass spectrometry and stable isotopes. Eur. J Clin Microbiol Infect Dis 33(6):949-55.

Magistro G, Scherberich JE, Bogner JR, Schubert S, Stief CG, Gratzke C. 2013. [Urinary tract infections]. MMW Fortschr Med 155(1):65-69.

Sammet S, Wieser A, Muller S, Huber M, Schubert S, Seybold U. 2013. Triple worm infestation in an HIV-infected patient. Infection 41(5):1053-4.

Kostrzewa M, Sparbier K, Maier T, Schubert S. 2013. MALDI-TOF MS: an upcoming tool for rapid detection of antibiotic resistance in microorganisms. Proteomics Clin Appl 7(11-12):767-78.


Sparbier K, Schubert S, Weller U, Boogen C, Kostrzewa M. 2012. MALDI-TOF MS based functional assay for the rapid detection of resistance against beta-lactam antibiotics. J Clin Microbiol 50(3):927-37.

Loetscher Y, Wieser A, Lengefeld J, Kaiser P, Schubert S, Heikenwalder M, Hardt WD, Stecher B. 2012. Salmonella transiently reside in luminal neutrophils in the inflamed gut. PLoS One 7(4):e34812.

Pritsch M, Wieser A, Soederstroem V, Poluda D, Eshetu T, Hoelscher M, Schubert S, Shock J, Loescher T, Berens-Riha N. 2012. Stability of gametocyte-specific Pfs25-mRNA in dried blood spots on filter paper subjected to different storage conditions. Malar J 11:138.

Dolch ME, Hornuss C, Klocke C, Praun S, Villinger J, Denzer W, Schelling G, Schubert S. 2012. Volatile organic compound analysis by ion molecule reaction mass spectrometry for gram-positive bacteria differentiation. Eur J Clin Microbiol Infect Dis 31(11):3007-13.

Dolch ME, Hornuss C, Klocke C, Praun S, Villinger J, Denzer W, Schelling G, Schubert S. 2012. Volatile compound profiling for the identification of Gram-negative bacteria by ion-molecule reaction-mass spectrometry. J Appl Microbiol 113(5):1097-105.

Wieser A, Schneider L, Jung J, Schubert S. 2012. MALDI-TOF MS in microbiological diagnostics-identification of microorganisms and beyond (mini review). Appl Microbiol Biotechnol 93(3):965-74. Review.


Schubert S, Weinert K, Wagner C, Gunzl B, Wieser A, Maier T, Kostrzewa M. 2011. Novel, Improved Sample Preparation for Rapid, Direct Identification from Positive Blood Cultures Using Matrix-Assisted Laser Desorption/Ionization Time-of-Flight (MALDI-TOF) Mass Spectrometry. J Mol Diagn 13:701-706.

Wieser A, Guggenberger C, Pritsch M, Heesemann J, Schubert S. 2011. A novel ex vivo set-up for dynamic long-term characterization of processes on mucosal interfaces by confocal imaging and simultaneous cytokine measurements. Cell Microbiol 13:742-751.

Wieser A, Magistro G, Norenberg D, Hoffmann C, Schubert S. 2011. First multi-epitope subunit vaccine against extraintestinal pathogenic Escherichia coli delivered by a bacterial type-3 secretion system (T3SS). Int J Med Microbiol 302(1):10-8.

Seybold U, Schubert S, Bogner JR, Hogardt M. 2011. Staphylococcus aureus infection following nasal colonization: an approach to rapid risk stratification in a university healthcare system. J Hosp Infect 79(4):297-301.

Wieser A, Schneider L, Jung J, Schubert S. 2011. MALDI-TOF MS in microbiological diagnostics-identification of microorganisms and beyond (mini review). Appl Microbiol Biotechnol DOI 10.1007/s00253-011-3783-4.


Schubert S, Norenberg D, Clermont O, Magistro G, Wieser A, Romann E, Hoffmann C, Weinert K, Denamur E. 2010. Prevalence and phylogenetic history of the TcpC virulence determinant in Escherichia coli. Int J Med Microbiol 300:429-434.

Wieser A, Romann E, Magistro G, Hoffmann C, Norenberg D, Weinert K, Schubert S. 2010. A multiepitope subunit vaccine conveys protection against extraintestinal pathogenic Escherichia coli in mice. Infect Immun 78:3432-3442.


Schubert S, Darlu P, Clermont O, Wieser A, Magistro G, Hoffmann C, Weinert K, Tenaillon O, Matic I, Denamur E. 2009. Role of intraspecies recombination in the spread of pathogenicity islands within the Escherichia coli species. PLoS Pathog (1):e1000257.


Cirl C, Wieser A, Yadav M, Duerr S, Schubert S, Fischer H, Stappert D, Wantia N, Rodriguez N, Wagner H, Svanborg C, Miethke T. 2008. Subversion of Toll-like receptor signaling by a unique family of bacterial Toll/interleukin-1 receptor domain-containing proteins. Nat Med 14:399-406.


Sorsa LJ, Feldmann F, Hildinger K, Dufke S, Schubert S. 2007. Characterization of four novel genomic regions of uropathogenic Escherichia coli highly associated with the extraintestinal virulent phenotype: a jigsaw puzzle of genetic modules. Int J Med Microbiol 297:83-95.

Feldmann F, Sorsa LJ, Hildinger K, Schubert S. 2007. The salmochelin siderophore receptor IroN contributes to invasion of urothelial cells by extraintestinal pathogenic Escherichia coli in vitro. Infect Immun 75:3183-3187.

Mennel S, Schubert S, Muller C. 2007. [Refractory intermediate uveitis in the presence of unexplained joint disease.]. Ophthalmologe 105(2):176-9.

Bielaszewska M, Dobrindt U, Gartner J, Gallitz I, Hacker J, Karch H, Muller D, Schubert S, Alexander SM, Sorsa LJ, Zdziarski J. 2007. Aspects of genome plasticity in pathogenic Escherichia coli. Int J Med Microbiol 297(7-8):625-39.

Benedek O, Schubert S. 2007. Mobility of the Yersinia High-Pathogenicity Island (HPI): transfer mechanisms of pathogenicity islands (PAIS) revisited. Acta Microbiol Immunol Hung 54:89-105. 


Hogardt M, Schubert S, Adler K, Götzfried M, Heesemann J. 2006. Sequence variability and functional analysis of MutS of hypermutable Pseudomonas aeruginosa cystic fibrosis isolates. Int. J. Med. Microbiol 296(4-5):313-20.


Patole P, Schubert S, Segerer S, Meßmer A, Khandoga S, Khandoga A, Henger A, Kretzler M, Werner M, Krombach F, Schlöndorff D, Anders HJ. 2005. Toll-like receptor-4 on both renal cells and bone marrow-derived cells signals for neutrophil recruitment during infective pyelonephritis. Kidney Int 68:2582-2587.

Johnson JR, Murray AC, Kuskowski MA, Schubert S, Prère M-F, Picard B, Colodner R, Raz R. 2005. Distribution and Characteristics of Escherichia coli Clonal Group A. Emerg Infect Dis 11:141-145


Negre VL, Bonacorsi S, Schubert S, Bidet P, Nassif X, Bingen E. 2004. The Siderophore Receptor IroN, but Not the High-Pathogenicity-Island or the Hemin Receptor ChuA, Contributes to the Bacteremic Step of Escherichia coli Neonatal Meningitis. Infect Immun 72:1216-1220.
Sorsa LJ, Dufke S, Schubert S. 2004. Identification of novel virulence-associated loci in uropathogenic Escherichia coli by suppression subtractive hybridization. FEMS Microbiol Lett 230:203-208.
Schubert S, Dufke S, Sorsa J, Heesemann J. 2004. A novel integrative and conjugative element (ICE) of Escherichia coli: the putative progenitor of the Yersinia high-pathogenicity island. Mol Microbiol 51:837-848.
Schubert S, Rakin A, Heesemann J. 2004. The Yersinia high-pathogenicity island (HPI): evolutionary and functional aspects. Int J Med Microbiol 294:83-94. 


Trulzsch K, Hoffmann H, Keller C, Schubert S, Bader L, Heesemann J, Roggenkamp A. 2003. Highly Resistant Metabolically Deficient Dwarf Mutant of Escherichia coli Is the Cause of a Chronic Urinary Tract Infection. J Clin Microbiol 41:5689-5694.

Waidmann M, Bechtold O, Frick JS, Lehr HA, Schubert S, Dobrindt U, Loeffler J, Bohn E, Autenrieth IB. 2003. Bacteroides vulgatus protects against Escherichia coli-induced colitis in gnotobiotic interleukin-2-deficient mice. Gastroenterology 125:162-177.
Oelschläger TA, Zhang D, Schubert S, Carniel E, Rabsch W, Karch H, Hacker J. 2003. The high-pathogenicity island is absent in human pathogens of Salmonella enterica subspecies I but present in isolates of subspecies III and VI. J Bacteriol 185:1107-1111.
Schubert S, Bockemühl J, Brendler U, Heesemann J. 2003. First Isolation of Virulent Yersinia enterocolitica O8, Biotype 1B in Germany. Eur J Clin Microbiol Infect Dis 22:66-68.
Sorsa LJ, Dufke S, Heesemann J, Schubert S. 2003. Characterization of an iroBCDEN gene cluster on a transmissible plasmid of uropathogenic Escherichia coli: evidence for horizontal transfer of a chromosomal virulence factor. Infect Immun 71:3285-3293.